Singularity

Here is a brief overview of available container files (more info in the links below):

• hello.sif - a simple container for demo purpose, allowing to experiment with Apptainer/Singularity features

• gwas.sif - multiple tools (released as binaries/executables) for imputation and GWAS analysis

• python3.sif - python3 environment with pre-installed modules and tools (Jupyter, Scipy, Pandas, scikit-learn, etc.)

• r.sif - R/RStudio environment with rareGWAMA, GenomicSEM, TwoSampleMR and GSMR packages installed (plus many standard R packages)

All containers have a common set of linux tools like gzip, tar, parallel, etc. Please open an issue if you’d like to add more of such basic tools. Please let us know if you face any problems.